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Ok before I give up I will try 1 more time so I'm on the knees...
I got the 2nd site working by in Cpanel - addon domains - I changed the 2nd sites document root to the same as the 1st site. so both show - public_html/troy.com.
But now every change I make to the 1 site show on the other.
I can not change the settings in Preferences , General - Multistore button will turn green but when I hit save it goes back to off. see pics.
please help, thanks
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I know this is an old topic, but it appears this issue had never been solved... I am currently dealing with this same issue.